CMV is also available as a commandline tool.

The source code of CMV, as well as the webserver is open source and available via GitHub and Hackage (License GPL-3):

• 

For instruction how to use CMV please see the Help page.For Linux we recommend installation via bioconda, for macOS usage of the docker container. The example input files used in the webservice (EGF, Piwi, Hammerhead Clan, tRNA Clan) can be retrieved here: Example input

Usage via biocontainers docker - macOS

CMV can be installed via docker. Once you have docker installed simply type:

Installation via bioconda - Linux

CMV can be installed via conda. Once you have conda installed simply type:

Installation via cabal-install

CMV is implemented in Haskell and can be installed via the Haskell package distribution sytem cabal. Additionally to cabal you require cairo, pango, happy and alex which can usually installed via the distribution package manager e.g. Ubuntu:

Once you have the dependencies installed simply type:

Optional dependencies

CMV and CMCV create secondary structure output which can be visualised via following optional dependencies.

• R2R
• forna

Precompiled Executables

• Linux x86_64 HMMV
• Linux x86_64 HMMCV
• Linux x86_64 CMV
• Linux x86_64 CMCV
• Linux x86_64 CMCWStoCMCV